ndex allows exchange of large image volumes with NeuroData.

ndmg combines diffusion and functional MRI data from individuals to estimate connectome reliably and scalably, and compare populations.

ndreg is a Python package that performs non-linear affine and deformable image registration.

NeuroDataViz (ndviz) is a fork of Neuroglancer, a web tool for viewing datasets stored using NeuroData's infrastructure.

ndwebtools is a web application that provides NeuroData tools for managing and viewing data on NeuroData's spatial database store.

Age of Software -- 2yrs; Platform (Programming Language, Database compatibility, etc) - ImageJ/Fiji; File Formats Supported -- tif

oopsi is a tool for performing model-based spike train inference from calcium imaging. OOPSI has now been subsumed by CaImAn (https://github.com/flatironinstitute/CaImAn).

Circuit analysis tool for local optogenetic stimulation and recording.

The paper [1] offered a comprehensive review on the progress on predictive coding and Bayesian inference. Categorizing from Marr’s three levels [2], Bayesian inference is on the computational level and predictive coding is on the representation level. As discussed in the paper, the two concepts can be developed alone or combined with each other. Predictive coding can be a useful neural representational motif for multiple computational goals (e.g. efficient coding, membrane potential dynamics opt